6AMA Dna Binding Protein Dna date Aug 09, 2017
title Structure Of S. Coelicolors. Venezuelae Bldc-Smea-Ssfa Comp 3.09 Angstrom
authors M.A.Schumacher
compound source
Molecule: Putative Dna-Binding Protein
Chain: A, B, G, H, K, L, Y, C, D, O, P
Engineered: Yes
Organism_scientific: Streptomyces Venezuelae
Organism_taxid: 54571
Gene: Aqf52_4259
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (99-Mer)
Chain: N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (99-Mer)
Chain: R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 2 2
R_factor 0.210 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.351 159.351 130.829 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.09 Å
Gene
Ontology
ChainFunctionProcessComponent
A, O, P, K, Y, B, H, C, D, G, L


Primary referenceThe MerR-like protein BldC binds DNA direct repeats as cooperative multimers to regulate Streptomyces development., Schumacher MA, den Hengst CD, Bush MJ, Le TBK, Tran NT, Chandra G, Zeng W, Travis B, Brennan RG, Buttner MJ, Nat Commun. 2018 Mar 19;9(1):1139. doi: 10.1038/s41467-018-03576-3. PMID:29556010
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (374 Kb) [Save to disk]
  • Biological Unit Coordinates (6ama.pdb1.gz) 368 Kb
  • CSU: Contacts of Structural Units for 6AMA
  • Structure Factors (436 Kb)
  • Retrieve 6AMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AMA from S2C, [Save to disk]
  • View 6AMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AMA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ama_O] [6ama_D] [6ama_K] [6ama_B] [6ama_L] [6ama_H] [6ama_A] [6ama_P] [6ama_Y] [6ama_R] [6ama_C] [6ama_G] [6ama_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AMA
  • Community annotation for 6AMA at PDBWiki (http://pdbwiki.org)

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