6APX Hydrolase date Aug 18, 2017
title Crystal Structure Of Human Dual Specificity Phosphatase 1 Ca Domain (C258s) As A Maltose Binding Protein Fusion In Compl The Monobody Ysx1
authors R.Gumpena, G.T.Lountos, R.K.Sreejith, J.E.Tropea, S.Cherry, D.S.W
compound source
Molecule: Maltose-Binding Periplasmic Protein,Dual Specific Protein Phosphatase 1;
Chain: A
Synonym: Mbp,Mmbp,Maltodextrin-Binding Protein,Dual Specifi Protein Phosphatase Hvh1,Mitogen-Activated Protein Kinase P 1,Mkp-1,Protein-Tyrosine Phosphatase Cl100;
Ec: 3.1.3.16,3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli (Strain K12), Homo Sa
Organism_common: Human
Organism_taxid: 83333, 9606
Strain: K12
Gene: Male, B4034, Jw3994, Dusp1, Cl100, Mkp1, Ptpn10, Vh1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Monobody Ysx1
Chain: B
Engineered: Yes

Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 43 21 2
R_factor 0.207 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.802 105.802 181.463 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand GOL, SO4 enzyme Hydrolase E.C.3.1.3.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • carbohydrate transmembrane t...


  • Primary referenceCrystal structure of the human dual specificity phosphatase 1 catalytic domain., Gumpena R, Lountos GT, Raran-Kurussi S, Tropea JE, Cherry S, Waugh DS, Protein Sci. 2017 Oct 20. doi: 10.1002/pro.3328. PMID:29052270
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (6apx.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 6APX
  • CSU: Contacts of Structural Units for 6APX
  • Structure Factors (978 Kb)
  • Retrieve 6APX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6APX from S2C, [Save to disk]
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  • Visual 3D analysis of 6APX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6apx_B] [6apx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6APX
  • Community annotation for 6APX at PDBWiki (http://pdbwiki.org)

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