6AQB Transferase date Aug 19, 2017
title Structure Of The Sh3 Domain Of Mlk3 Bound To Peptide Generat Phage Display
authors S.K.Kall, A.Lavie
compound source
Molecule: Chimera Protein Of Mlk3-Sh3 And Mip (E.C.
Chain: A, B
Fragment: Sh3 Domain (Unp Residues 41-105)
Synonym: Mixed Lineage Kinase 3,Src-Homology 3 Domain-Conta Proline-Rich Kinase,Mixed Lineage Kinase 3,Src-Homology 3 D Containing Proline-Rich Kinase;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k11, Mlk3, Ptk1, Sprk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.187 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
80.510 45.740 49.660 90.00 120.88 90.00
method X-Ray Diffractionresolution 1.50 Å
enzyme Transferase E.C. BRENDA
Primary referenceIdentification of two distinct peptide-binding pockets in the SH3 domain of human mixed-lineage kinase 3., Kokoszka ME, Kall SL, Khosla S, McGinnis JE, Lavie A, Kay BK, J Biol Chem. 2018 Aug 31;293(35):13553-13565. doi: 10.1074/jbc.RA117.000262. Epub, 2018 Jul 6. PMID:29980598
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (6aqb.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 6AQB
  • Structure Factors (651 Kb)
  • Retrieve 6AQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AQB from S2C, [Save to disk]
  • View 6AQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 6AQB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6aqb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6aqb_B] [6aqb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AQB
  • Community annotation for 6AQB at PDBWiki (http://pdbwiki.org)

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