6ARQ Immune System date Aug 23, 2017
title Crystal Structure Of Cd96 (D1) Bound To Cd155necl-5 (D1-3)
authors F.A.Deuss, G.M.Watson, J.Rossjohn, R.Berry
compound source
Molecule: T-Cell Surface Protein Tactile
Chain: A
Synonym: Cell Surface Antigen Cd96,T Cell-Activated Increas Expression Protein;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd96
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Poliovirus Receptor
Chain: D
Synonym: Nectin-Like Protein 5,Necl-5
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pvr, Pvs
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.138 70.819 224.928 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.88 Å
Primary referenceStructural Basis for CD96 Immune Receptor Recognition of Nectin-like Protein-5, CD155., Deuss FA, Watson GM, Fu Z, Rossjohn J, Berry R, Structure. 2018 Nov 8. pii: S0969-2126(18)30384-8. doi:, 10.1016/j.str.2018.10.023. PMID:30528596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (6arq.pdb1.gz) 131 Kb
  • CSU: Contacts of Structural Units for 6ARQ
  • Structure Factors (553 Kb)
  • Retrieve 6ARQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ARQ from S2C, [Save to disk]
  • View 6ARQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ARQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6arq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6arq_D] [6arq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ARQ
  • Community annotation for 6ARQ at PDBWiki (http://pdbwiki.org)

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