6ASO Splicing date Aug 25, 2017
title Structure Of Yeast U6 Snrnp With 3'-Phosphate Terminated U6
authors E.J.Montemayor, D.A.Brow, S.E.Butcher
compound source
Molecule: U4u6 Snrna-Associated-Splicing Factor Prp24
Chain: A
Synonym: U4u6 Snrnp Protein
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Atcc 204508 S288c
Gene: Prp24, Ymr268c, Ym8156.10c
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U6 Snrna-Associated Sm-Like Protein Lsm2
Chain: B
Synonym: Small Nuclear Ribonucleoprotein D Homolog Snp3
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Atcc 204508 S288c
Gene: Lsm2, Smx5, Snp3, Ybl026w, Ybl0425
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U6 Snrna-Associated Sm-Like Protein Lsm3
Chain: C
Synonym: Smx4 Protein
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Atcc 204508 S288c
Gene: Lsm3, Smx4, Uss2, Ylr438c-A
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U6 Snrna-Associated Sm-Like Protein Lsm4
Chain: D
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Atcc 204508 S288c
Gene: Lsm4, Sdb23, Uss1, Yer112w
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U6 Snrna-Associated Sm-Like Protein Lsm5
Chain: E
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Atcc 204508 S288c
Gene: Lsm5, Yer146w
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U6 Snrna-Associated Sm-Like Protein Lsm6
Chain: F
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Yjm789
Gene: Lsm6, Scy_1265
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U6 Snrna-Associated Sm-Like Protein Lsm7
Chain: G
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Atcc 204508 S288c
Gene: Lsm7, Ynl147w, N1202, N1780
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: U6 Snrna-Associated Sm-Like Protein Lsm8
Chain: H
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Strain: Atcc 204508 S288c
Gene: Lsm8, Yjr022w, J1464, Yjr83.16
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Saccharomyces Cerevisiae Strain Hb_s_gimblettroad Chromosome Xii Sequence;
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.195 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.197 77.390 118.614 90.00 105.91 90.00
method X-Ray Diffractionresolution 2.71 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


D


E


F


G


H


Primary referenceArchitecture of the U6 snRNP reveals specific recognition of 3'-end processed U6 snRNA., Montemayor EJ, Didychuk AL, Yake AD, Sidhu GK, Brow DA, Butcher SE, Nat Commun. 2018 May 1;9(1):1749. doi: 10.1038/s41467-018-04145-4. PMID:29717126
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (6aso.pdb1.gz) 288 Kb
  • CSU: Contacts of Structural Units for 6ASO
  • Structure Factors (793 Kb)
  • Retrieve 6ASO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ASO from S2C, [Save to disk]
  • View 6ASO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ASO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6aso from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6aso_E] [6aso_F] [6aso_B] [6aso_G] [6aso_I] [6aso_C] [6aso_H] [6aso_D] [6aso_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ASO
  • Community annotation for 6ASO at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science