6AT5 Immune System date Aug 27, 2017
title Crystal Structure Of Hla-B07:02 In Complex With An Ny-Eso-1
authors B.S.Gully, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-7 Alpha
Chain: A
Synonym: Mhc Class I Antigen B7
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cancertestis Antigen 1 Peptide
Chain: C
Synonym: Autoimmunogenic Cancertestis Antigen Ny-Eso-1,Can Antigen 6.1,Ct6.1,L Antigen Family Member 2,Lage-2;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.194 82.066 112.047 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDivergent T-cell receptor recognition modes of a HLA-I restricted extended tumour-associated peptide., Chan KF, Gully BS, Gras S, Beringer DX, Kjer-Nielsen L, Cebon J, McCluskey J, Chen W, Rossjohn J, Nat Commun. 2018 Mar 12;9(1):1026. doi: 10.1038/s41467-018-03321-w. PMID:29531227
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (6at5.pdb1.gz) 83 Kb
  • CSU: Contacts of Structural Units for 6AT5
  • Structure Factors (3129 Kb)
  • Retrieve 6AT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AT5 from S2C, [Save to disk]
    • View 6AT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AT5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6at5_C] [6at5_B] [6at5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AT5
  • Community annotation for 6AT5 at PDBWiki (http://pdbwiki.org)

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