6ATV Protein Binding Viral Protein date Aug 29, 2017
title The Molecular Mechanisms By Which Ns1 Of The 1918 Spanish In Virus Hijack Host Protein-Protein Interactions
authors Q.Shen, D.Zeng, B.Zhao, P.Li, J.H.Cho
compound source
Molecule: Adapter Molecule Crk
Chain: A
Synonym: Proto-Oncogene C-Crk,P38
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crk
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Proline-Rich Motif In Iav-Ns1
Chain: M
Engineered: Yes
Synthetic: Yes
Organism_scientific: Orthomyxoviridae
Organism_taxid: 11308
symmetry Space Group: P 61 2 2
R_factor 0.185 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.840 39.840 171.951 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
ligand ACE, NH2 enzyme
Primary referenceMolecular Mechanisms of Tight Binding through Fuzzy Interactions., Shen Q, Shi J, Zeng D, Zhao B, Li P, Hwang W, Cho JH, Biophys J. 2018 Mar 27;114(6):1313-1320. doi: 10.1016/j.bpj.2018.01.031. PMID:29590589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (6atv.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 6ATV
  • CSU: Contacts of Structural Units for 6ATV
  • Structure Factors (99 Kb)
  • Retrieve 6ATV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ATV from S2C, [Save to disk]
    • View 6ATV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ATV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6atv_A] [6atv_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ATV
  • Community annotation for 6ATV at PDBWiki (http://pdbwiki.org)

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