6AU3 Transferase date Aug 30, 2017
title Crystal Structure Of Setdb1 Tudor Domain With Aryl Triazole
authors P.Mader, R.Mendoza-Sanchez, A.Iqbal, A.Dong, E.Dobrovetsky, V.B.C S.K.Liew, W.Tempel, D.Smil, C.C.Dela Sena, S.Kennedy, D.Diaz, A.H M.Vedadi, P.J.Brown, V.Santhakumar, C.Bountra, A.M.Edwards, A.K. C.H.Arrowsmith, Structural Genomics Consortium (Sgc)
compound source
Molecule: Histone-Lysine N-Methyltransferase Setdb1
Chain: A
Fragment: Tudor Domain (Unp Residues 196-402)
Synonym: Erg-Associated Protein With Set Domain,Eset,Histon Methyltransferase 4,H3-K9-Hmtase 4,Lysine N-Methyltransfera Domain Bifurcated 1;
Ec: 2.1.1.43
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Setdb1, Kiaa0067, Kmt1e
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.172 63.528 69.987 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BWM, EDO, SO4, UNX enzyme Transferase E.C.2.1.1.43 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (6au3.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 6AU3
  • CSU: Contacts of Structural Units for 6AU3
  • Structure Factors (918 Kb)
  • Retrieve 6AU3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AU3 from S2C, [Save to disk]
    • View 6AU3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AU3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6au3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AU3
  • Community annotation for 6AU3 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science