6AVJ Metal Binding Protein date Sep 02, 2017
title Crystal Structure Of Human Mitochondrial Inner Neet Protein Cisd3
authors C.H.Lipper, O.Karmi, Y.S.Sohn, M.Darash-Yahana, H.Lammert, L.Song R.Mittler, R.Nechushtai, J.N.Onuchic, P.A.Jennings
compound source
Molecule: Cdgsh Iron-Sulfur Domain-Containing Protein 3, Mitochondrial;
Chain: A, B, C
Synonym: Mitoneet-Related Protein 2,Miner2
Engineered: Yes
Mutation: Yes
Other_details: Mint Residues 36-127
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cisd3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Bl21-Codonplus (De3)-Ril
Expression_system_plasmid: Pet24a
symmetry Space Group: C 1 2 1
R_factor 0.169 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.406 52.250 78.951 90.00 108.67 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FES enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructure of the human monomeric NEET protein MiNT and its role in regulating iron and reactive oxygen species in cancer cells., Lipper CH, Karmi O, Sohn YS, Darash-Yahana M, Lammert H, Song L, Liu A, Mittler R, Nechushtai R, Onuchic JN, Jennings PA, Proc Natl Acad Sci U S A. 2017 Dec 19. pii: 1715842115. doi:, 10.1073/pnas.1715842115. PMID:29259115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (6avj.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (6avj.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (6avj.pdb3.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 6AVJ
  • CSU: Contacts of Structural Units for 6AVJ
  • Structure Factors (732 Kb)
  • Retrieve 6AVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AVJ from S2C, [Save to disk]
  • View 6AVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AVJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6avj_C] [6avj_A] [6avj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AVJ
  • Community annotation for 6AVJ at PDBWiki (http://pdbwiki.org)

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