6AVM	Transferase Dna	date	Sep 03, 2017
title	Structure Of Hiv-1 Reverse Transcriptase (Rt) Ternary Comple Double Stranded Dna And An Incoming D4ttp At Ph 9.5 With Cr Linking To Second Base Template Overhang
authors	S.E.Martinez, K.Das, E.Arnold
compound		source
Molecule: Hiv-1 Reverse Transcriptase P66 Subunit Chain: A, C Synonym: Pr160gag-Pol Ec: 2.7.7.49,2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10); Organism_common: Hiv-1 Organism_taxid: 11678 Strain: Isolate Bh10 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_variant: Bl21 Codonplus Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcdf-2 Eklic
Molecule: Hiv-1 Reverse Transcriptase P51 Subunit Chain: B, D Synonym: Pr160gag-Pol Ec: 2.7.7.49,2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Bh10); Organism_common: Hiv-1 Organism_taxid: 11678 Strain: Isolate Bh10 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_variant: Bl21 Codonplus Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcdf-2 Eklic
Molecule: Dna (27-Mer) Chain: T, E Engineered: Yes		Synthetic: Yes Organism_scientific: Human Immunodeficiency Virus Type 1 Bh Organism_taxid: 11678 Other_details: Commercial Dna Oligo Synthesis: Integrated D Technologies;
Molecule: Dna (5'- D(Acpapgptpcpcpcptpgptptpcpgpgpgpcpgpcp 3'); Chain: P, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 Other_details: Commercial Dna Oligo Synthesis: Midland Cert Reagent Company
symmetry	Space Group: P 1 21 1	R_factor 0.191 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.264 133.333 140.203 90.00 97.63 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	D4T, DDG, GOL, MG	enzyme	Transferase E.C.2.7.7.49 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B
Primary reference	Structure of HIV-1 reverse transcriptase/d4TTP complex: novel DNA cross-linking site and pH-dependent conformational changes., Martinez SE, Bauman JD, Das K, Arnold E, Protein Sci. 2018 Nov 30. doi: 10.1002/pro.3559. PMID:30499174

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (764 Kb) [Save to disk] Biological Unit Coordinates (6avm.pdb1.gz) 382 Kb Biological Unit Coordinates (6avm.pdb2.gz) 376 Kb LPC: Ligand-Protein Contacts for 6AVM CSU: Contacts of Structural Units for 6AVM Structure Factors (777 Kb) Retrieve 6AVM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6AVM from S2C, [Save to disk]

View 6AVM in 3D

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Visual 3D analysis of 6AVM

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6avm_D] [6avm_C] [6avm_A] [6avm_F] [6avm_E] [6avm_P] [6avm_T] [6avm_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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