6AXY Viral Protein date Sep 07, 2017
title Structure Of The V11it58ai124a Mutant Of The Hiv-1 Capsid
authors A.T.Gres, K.A.Kirby, S.G.Sarafianos
compound source
Molecule: Hiv-1 Capsid Protein
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Nl4-3
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 6
R_factor 0.213 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.915 91.915 57.919 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.78 Å
ligand CL, IOD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (6axy.pdb1.gz) 416 Kb
  • LPC: Ligand-Protein Contacts for 6AXY
  • CSU: Contacts of Structural Units for 6AXY
  • Structure Factors (307 Kb)
  • Retrieve 6AXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AXY from S2C, [Save to disk]
    • View 6AXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AXY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6axy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AXY
  • Community annotation for 6AXY at PDBWiki (http://pdbwiki.org)

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