6AYF Transport Protein date Sep 08, 2017
title Trpml3ml-Sa1 Complex At Ph 7.4
authors X.Zhou, M.Li, D.Su, Q.Jia, H.Li, X.Li, J.Yang
compound source
Molecule: Mucolipin-3
Chain: A, B, C, D
Synonym: Transient Receptor Potential Channel Mucolipin 3,T
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mcoln3
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.62 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • NAADP-sensitive calcium-rele...


    • Primary referenceCryo-EM structures of the human endolysosomal TRPML3 channel in three distinct states., Zhou X, Li M, Su D, Jia Q, Li H, Li X, Yang J, Nat Struct Mol Biol. 2017 Nov 6. doi: 10.1038/nsmb.3502. PMID:29106414
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]
  • Biological Unit Coordinates (6ayf.pdb1.gz) 316 Kb
  • LPC: Ligand-Protein Contacts for 6AYF
  • CSU: Contacts of Structural Units for 6AYF
  • Retrieve 6AYF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AYF from S2C, [Save to disk]
    • View 6AYF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AYF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ayf_B] [6ayf_D] [6ayf_C] [6ayf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AYF
  • Community annotation for 6AYF at PDBWiki (http://pdbwiki.org)

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