OCA Atlas for 6AZ1

6AZ1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

4OC, 5MC, 7MG, A2M, C4J, M1Y, MA6, MG, MIA, OMC, OMG, OMU, PAR

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B
C
D
E
F
G
H
I
J
K
L
M
N, a, g
O
P
Q
R
S
T
U
V
W
X
Y
Z
b
c
d
e
f

Primary reference

Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin., Shalev-Benami M, Zhang Y, Rozenberg H, Nobe Y, Taoka M, Matzov D, Zimmerman E, Bashan A, Isobe T, Jaffe CL, Yonath A, Skiniotis G, Nat Commun. 2017 Nov 17;8(1):1589. doi: 10.1038/s41467-017-01664-4. PMID:29150609

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1419 Kb) [Save to disk]

Biological Unit Coordinates (6az1.pdb1.gz) 1398 Kb

LPC: Ligand-Protein Contacts for 6AZ1

CSU: Contacts of Structural Units for 6AZ1

Retrieve 6AZ1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6AZ1 from S2C, [Save to disk]

View 6AZ1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6az1_Q] [6az1_K] [6az1_L] [6az1_M] [6az1_N] [6az1_O] [6az1_P] [6az1_1] [6az1_2] [6az1_3] [6az1_4] [6az1_5] [6az1_A] [6az1_B] [6az1_C] [6az1_D] [6az1_E] [6az1_F] [6az1_G] [6az1_H] [6az1_I] [6az1_J] [6az1_R] [6az1_S] [6az1_T] [6az1_U] [6az1_V] [6az1_W] [6az1_X] [6az1_Y] [6az1_Z] [6az1_a] [6az1_b] [6az1_c] [6az1_d] [6az1_e] [6az1_f] [6az1_g]

SWISS-PROT database:

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