6AZ2 Immune System date Sep 09, 2017
title Crystal Structure Of Asf1-Fab 12e Complex
authors L.J.Bailey, A.A.Kossiakoff
compound source
Molecule: Fab Heavy Chain
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone Chaperone Asf1
Chain: B, D
Synonym: Anti-Silencing Function Protein 1,Yasf1
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Asf1, Cia1, Yjl115w, J0755
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab Light Chain
Chain: E, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.666 109.743 122.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.48 Å
Gene
Ontology
ChainFunctionProcessComponent
D, B


Primary referenceLocking the Elbow: Improved Antibody Fab Fragments as Chaperones for Structure Determination., Bailey LJ, Sheehy KM, Dominik PK, Liang WG, Rui H, Clark M, Jaskolowski M, Kim Y, Deneka D, Tang WJ, Kossiakoff AA, J Mol Biol. 2017 Dec 19. pii: S0022-2836(17)30593-4. doi:, 10.1016/j.jmb.2017.12.012. PMID:29273204
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (547 Kb) [Save to disk]
  • Biological Unit Coordinates (6az2.pdb1.gz) 271 Kb
  • Biological Unit Coordinates (6az2.pdb2.gz) 274 Kb
  • CSU: Contacts of Structural Units for 6AZ2
  • Structure Factors (1039 Kb)
  • Retrieve 6AZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AZ2 from S2C, [Save to disk]
  • View 6AZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AZ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6az2_D] [6az2_A] [6az2_F] [6az2_C] [6az2_E] [6az2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AZ2
  • Community annotation for 6AZ2 at PDBWiki (http://pdbwiki.org)

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