6B0P	Transcription Dna	date	Sep 14, 2017
title	Zinc Finger Domain Of Wt1(-Kts Form) With 12+1mer Oligonucle 3' Triplet Ggt
authors	J.R.Horton, X.Cheng
compound		source
Molecule: Wilms Tumor Protein Chain: D, A Fragment: Unp Residues 304-420 Synonym: Wt33 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Wt1 Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag Expression_system_taxid: 866768
Molecule: Dna (5'-D(Pgpcpgptpgpgpgpapgpgpgpt)-3 Chain: E, B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
Molecule: Dna (5'-D(Papcpcpcptpcpcpcpapcpgpc)-3 Chain: F, C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.188 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.798 84.402 85.968 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.08 Å
ligand	EDO, ZN	enzyme
Primary reference	Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites., Wang D, Horton JR, Zheng Y, Blumenthal RM, Zhang X, Cheng X, Nucleic Acids Res. 2017 Dec 27. pii: 4780158. doi: 10.1093/nar/gkx1274. PMID:29294058

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk] Biological Unit Coordinates (6b0p.pdb1.gz) 66 Kb Biological Unit Coordinates (6b0p.pdb2.gz) 66 Kb LPC: Ligand-Protein Contacts for 6B0P CSU: Contacts of Structural Units for 6B0P Structure Factors (833 Kb) Retrieve 6B0P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6B0P from S2C, [Save to disk]

View 6B0P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6B0P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6b0p_B] [6b0p_C] [6b0p_F] [6b0p_E] [6b0p_D] [6b0p_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 6B0P

Community annotation for 6B0P at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---