6B3C Viral Protein Inhibitor date Sep 21, 2017
title Crystal Structure Of Hiv Protease Complexed With N-(3-Fluoro ((2s,6r)-6-Methyl-1-(Phenylsulfonyl)Piperazin-2-Yl)Ethyl)Ph Bis(4-Fluorophenyl)Propanamide
authors H.P.Su
compound source
Molecule: Hiv-1 Protease
Chain: A, B
Ec: 3.4.23.16
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676
Gene: Gag-Pol
Expression_system: Human Immunodeficiency Virus 1
Expression_system_taxid: 11676
symmetry Space Group: P 21 21 2
R_factor 0.183 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.620 86.060 46.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CKS, CL enzyme Hydrolase E.C.3.4.23.16 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign and Synthesis of Piperazine Sulfonamide Cores Leading to Highly Potent HIV-1 Protease Inhibitors., Bungard CJ, Williams PD, Schulz J, Wiscount CM, Holloway MK, Loughran HM, Manikowski JJ, Su HP, Bennett DJ, Chang L, Chu XJ, Crespo A, Dwyer MP, Keertikar K, Morriello GJ, Stamford AW, Waddell ST, Zhong B, Hu B, Ji T, Diamond TL, Bahnck-Teets C, Carroll SS, Fay JF, Min X, Morris W, Ballard JE, Miller MD, McCauley JA, ACS Med Chem Lett. 2017 Nov 13;8(12):1292-1297. doi:, 10.1021/acsmedchemlett.7b00386. eCollection 2017 Dec 14. PMID:29259750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (6b3c.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 6B3C
  • CSU: Contacts of Structural Units for 6B3C
  • Structure Factors (1025 Kb)
  • Retrieve 6B3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B3C from S2C, [Save to disk]
    • View 6B3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6B3C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b3c_A] [6b3c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6B3C
  • Community annotation for 6B3C at PDBWiki (http://pdbwiki.org)

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