6B8H Membrane Protein date Oct 07, 2017
title Mosaic Model Of Yeast Mitochondrial Atp Synthase Monomer
authors H.Guo, S.A.Bueler, J.L.Rubinstein
compound source
Molecule: Atp Synthase Subunit 9, Mitochondrial
Chain: 1, 2, 3, 4, 5, 6, 7, 8, 9, 0, L, M, N, P, Q, R, S, T
Synonym: Lipid-Binding Protein,Oligomycin Resistance Protei
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Protein 8
Chain: A, V
Synonym: A6l,Atp-Associated Protein 1,F-Atpase Subunit 8

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit A
Chain: a, p
Synonym: F-Atpase Protein 6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit 4, Mitochondrial
Chain: b, q

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit D, Mitochondrial
Chain: d, r

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit E, Mitochondrial
Chain: e, s

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit F, Mitochondrial
Chain: f, t

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Aatp Synthase Subunit G
Chain: g, u

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit J, Mitochondrial
Chain: I, w
Synonym: Atpase Synthase I Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit K, Mitochondrial
Chain: k, x

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: K, B, C, n, W, X

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F, Y, Z, c
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G, j
Synonym: F-Atpase Gamma Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Delta, Mitochondrial
Chain: H, l
Synonym: F-Atpase Delta Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Catalytic Sector F1 Epsilon Subunit
Chain: I, m

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932

Molecule: Atp Synthase Subunit 5, Mitochondrial
Chain: O, o
Synonym: Atp Synthase Chain 5,Oligomycin Sensitivity Confer Protein,Oscp;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit H
Chain: h, v

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
ligand
enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H, l


I, m


K, W, B, C, n, X


O, o


S, T, N, 7, 2, 1, J, U, Q, M, 0, L, 6, 3, P, 9, 8, 4, R, 5


V, A


Y, E, Z, c, D, F


a, p


d, r


j, G


k, x

  • mitochondrial proton-transpo...
  • q, b


    t, f


    w, i


    Primary referenceAtomic model for the dimeric FO region of mitochondrial ATP synthase., Guo H, Bueler SA, Rubinstein JL, Science. 2017 Oct 26. pii: eaao4815. doi: 10.1126/science.aao4815. PMID:29074581
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2683 Kb) [Save to disk]
  • Biological Unit Coordinates (6b8h.pdb1.gz) 2666 Kb
  • CSU: Contacts of Structural Units for 6B8H
  • Retrieve 6B8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B8H from S2C, [Save to disk]
  • View 6B8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6B8H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6b8h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b8h_N] [6b8h_1] [6b8h_E] [6b8h_R] [6b8h_6] [6b8h_p] [6b8h_t] [6b8h_S] [6b8h_I] [6b8h_L] [6b8h_G] [6b8h_l] [6b8h_s] [6b8h_j] [6b8h_9] [6b8h_8] [6b8h_B] [6b8h_o] [6b8h_w] [6b8h_X] [6b8h_V] [6b8h_C] [6b8h_i] [6b8h_h] [6b8h_A] [6b8h_J] [6b8h_e] [6b8h_T] [6b8h_u] [6b8h_Z] [6b8h_n] [6b8h_Y] [6b8h_7] [6b8h_d] [6b8h_2] [6b8h_D] [6b8h_f] [6b8h_4] [6b8h_b] [6b8h_P] [6b8h_H] [6b8h_g] [6b8h_k] [6b8h_W] [6b8h_x] [6b8h_U] [6b8h_3] [6b8h_5] [6b8h_0] [6b8h_O] [6b8h_q] [6b8h_c] [6b8h_M] [6b8h_r] [6b8h_v] [6b8h_m] [6b8h_Q] [6b8h_K] [6b8h_F] [6b8h_a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6B8H
  • Community annotation for 6B8H at PDBWiki (http://pdbwiki.org)

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