6BC0 Signaling Protein date Oct 20, 2017
title A Complex Between Ph Domain Of P190rhogef And Activated Rhoa A Gtp Analog
authors Z.Chen, P.C.Sternweis
compound source
Molecule: Rho Guanine Nucleotide Exchange Factor 28
Chain: A
Synonym: 190 Kda Guanine Nucleotide Exchange Factor,P190rho Guanine Nucleotide Exchange Factor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgef28, Kiaa1998, Rgnef
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-Kg-Tev

Molecule: Transforming Protein Rhoa
Chain: F
Synonym: Rho Cdna Clone 12,H12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhoa, Arh12, Arha, Rho12
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pgex-Kg-Tev
symmetry Space Group: P 65 2 2
R_factor 0.223 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.160 73.160 266.270 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand GSP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceDirect regulation of p190RhoGEF by activated Rho and Rac GTPases., Dada O, Gutowski S, Brautigam CA, Chen Z, Sternweis PC, J Struct Biol. 2017 Nov 28. pii: S1047-8477(17)30210-1. doi:, 10.1016/j.jsb.2017.11.014. PMID:29196061
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (6bc0.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 6BC0
  • CSU: Contacts of Structural Units for 6BC0
  • Structure Factors (285 Kb)
  • Retrieve 6BC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BC0 from S2C, [Save to disk]
  • View 6BC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BC0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bc0_A] [6bc0_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BC0
  • Community annotation for 6BC0 at PDBWiki (http://pdbwiki.org)

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