6BCF Hydrolase Dna date Oct 20, 2017
title I-Ltri G183a Bound To Cognate Substrate (Pre-Cleavage Comple
authors C.Brown, K.Zhang, T.A.Mcmurrough, G.B.Gloor, D.R.Edgell, M.Junop
compound source
Molecule: Ribosomal Protein 3homing Endonuclease-Like Fusi Protein;
Chain: D, A, G, J
Engineered: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
Gene: Heg Fusion, Rps3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (26-Mer)
Chain: E, B, H, K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483

Molecule: Dna (26-Mer)
Chain: F, C, I, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
symmetry Space Group: P 1
R_factor 0.239 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.956 66.770 169.414 90.12 90.08 90.06
method X-Ray Diffractionresolution 2.92 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


Primary referenceActive site residue identity regulates cleavage preference of LAGLIDADG homing endonucleases., McMurrough TA, Brown CM, Zhang K, Hausner G, Junop MS, Gloor GB, Edgell DR, Nucleic Acids Res. 2018 Oct 24. pii: 5144155. doi: 10.1093/nar/gky976. PMID:30357419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (6bcf.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (6bcf.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (6bcf.pdb3.gz) 67 Kb
  • Biological Unit Coordinates (6bcf.pdb4.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 6BCF
  • CSU: Contacts of Structural Units for 6BCF
  • Structure Factors (1080 Kb)
  • Retrieve 6BCF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BCF from S2C, [Save to disk]
  • View 6BCF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BCF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bcf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bcf_I] [6bcf_K] [6bcf_D] [6bcf_L] [6bcf_B] [6bcf_J] [6bcf_A] [6bcf_H] [6bcf_E] [6bcf_F] [6bcf_C] [6bcf_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BCF
  • Community annotation for 6BCF at PDBWiki (http://pdbwiki.org)

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