6BCH Hydrolase Dna date Oct 20, 2017
title I-Ltri E29d Bound To Cognate Substrate (Nicked Complex)
authors C.Brown, K.Zhang, T.A.Mcmurrough, G.B.Gloor, D.R.Edgell, M.Junop
compound source
Molecule: Ribosomal Protein 3homing Endonuclease-Like Fusi Protein;
Chain: A, D, H, L
Engineered: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
Gene: Heg Fusion, Rps3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Gpgptpcptpapapapcpgptpcpgp 3');
Chain: B, E, I, N
Engineered: Yes

Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483

Molecule: Dna (26-Mer)
Chain: C, F, J, O
Engineered: Yes

Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483

Molecule: Dna (5'-D(Tpapgpgpapgpcpaptptpt)-3')
Chain: X, G, K, P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Leptographium Truncatum
Organism_taxid: 330483
symmetry Space Group: P 1
R_factor 0.254 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.760 66.315 169.924 90.03 90.03 90.22
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
H, A, D, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (6bch.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (6bch.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (6bch.pdb3.gz) 67 Kb
  • Biological Unit Coordinates (6bch.pdb4.gz) 68 Kb
  • CSU: Contacts of Structural Units for 6BCH
  • Structure Factors (963 Kb)
  • Retrieve 6BCH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BCH from S2C, [Save to disk]
  • View 6BCH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BCH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bch from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bch_F] [6bch_B] [6bch_K] [6bch_C] [6bch_E] [6bch_O] [6bch_G] [6bch_L] [6bch_H] [6bch_A] [6bch_X] [6bch_D] [6bch_N] [6bch_P] [6bch_J] [6bch_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BCH
  • Community annotation for 6BCH at PDBWiki (http://pdbwiki.org)

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