6BD0 Hydrolase Dna date Oct 20, 2017
title I-Onui K227y, D236a Bound To Cognate Substrate (Pre-Cleavage
authors C.Brown, K.Zhang, M.Laforet, T.A.Mcmurrough, G.B.Gloor, D.R.Edgel
compound source
Molecule: Ribosomal Protein 3homing Endonuclease-Like Prot Fusion;
Chain: A
Engineered: Yes
 Organism_scientific: Ophiostoma Novo-Ulmi Subsp. Americana
Organism_taxid: 170178
Gene: Heg Fusion, Rps3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (25-Mer)
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Ophiostoma Novo-Ulmi
Organism_taxid: 42373

Molecule: Dna (25-Mer)
Chain: C
Engineered: Yes
Synthetic: Yes
Organism_scientific: Ophiostoma Novo-Ulmi
Organism_taxid: 42373
symmetry Space Group: P 21 21 21
R_factor 0.165 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.880 66.740 159.830 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (6bd0.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 6BD0
  • CSU: Contacts of Structural Units for 6BD0
  • Structure Factors (2055 Kb)
  • Retrieve 6BD0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BD0 from S2C, [Save to disk]
    • View 6BD0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BD0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bd0_A] [6bd0_C] [6bd0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BD0
  • Community annotation for 6BD0 at PDBWiki (http://pdbwiki.org)

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