6BIK Signaling Protein date Nov 02, 2017
title Btk Complex With Compound 7
authors J.R.Kiefer, C.Eigenbrot, C.L.Yu
compound source
Molecule: Tyrosine-Protein Kinase Btk
Chain: A
Synonym: Agammaglobulinemia Tyrosine Kinase,Atk,B-Cell Prog Kinase,Bpk,Bruton Tyrosine Kinase;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Btk, Agmx1, Atk, Bpk
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 61
R_factor 0.161 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.016 108.016 41.631 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand DTJ, GOL, OCS, SO4 enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceWater molecules in protein-ligand interfaces. Evaluation of software tools and SAR comparison., Nittinger E, Gibbons P, Eigenbrot C, Davies DR, Maurer B, Yu CL, Kiefer JR, Kuglstatter A, Murray J, Ortwine DF, Tang Y, Tsui V, J Comput Aided Mol Des. 2019 Feb 12. pii: 10.1007/s10822-019-00187-y. doi:, 10.1007/s10822-019-00187-y. PMID:30756207
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (6bik.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 6BIK
  • CSU: Contacts of Structural Units for 6BIK
  • Structure Factors (548 Kb)
  • Retrieve 6BIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BIK from S2C, [Save to disk]
  • View 6BIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BIK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bik_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BIK
  • Community annotation for 6BIK at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science