6BIN	Immune System	date	Nov 02, 2017
title	Hla-Drb1 In Complex With Type II Collagen Peptide
authors	Y.T.Ting, S.W.Scally, J.Rossjohn
compound		source
Molecule: Hla Class II Histocompatibility Antigen, Dr Alpha Chain: A Synonym: Mhc Class II Antigen Dra Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-Dra, Hla-Dra1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnti-
Molecule: Type II Collagen 1240cit 1237-1249 Chain: C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnti-
Molecule: Hla Class II Histocompatibility Antigen, Drb1-4 B Chain: B Synonym: Mhc Class II Antigen Drb14,Dr4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-Drb1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnti-
symmetry	Space Group: C 2 2 21	R_factor 0.201 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.350 183.710 77.190 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	CIR, NAG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in Rheumatoid Arthritis., Ting YT, Petersen J, Ramarathinam SH, Scally SW, Loh KL, Thomas R, Suri A, Baker DG, Purcell AW, Reid HH, Rossjohn J, J Biol Chem. 2018 Jan 9. pii: RA117.001013. doi: 10.1074/jbc.RA117.001013. PMID:29317506

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (6bin.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 6BIN CSU: Contacts of Structural Units for 6BIN Structure Factors (596 Kb) Retrieve 6BIN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6BIN from S2C, [Save to disk]

View 6BIN in 3D

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Visual 3D analysis of 6BIN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6bin_A] [6bin_C] [6bin_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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