6BJN Peptide Binding Protein date Nov 06, 2017
title Pick1 Pdz Domain In Complex With The Class I Pdz Binding Mot
authors D.J.Marcotte
compound source
Molecule: Prkca-Binding Protein
Chain: A, B
Synonym: Protein Interacting With C Kinase 1,Protein Kinase Binding Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pick1, Prkcabp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.194 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.473 54.473 78.119 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.43 Å
Primary referenceLock and Chop: A novel method for the generation of a PICK1 PDZ domain and piperidine-based inhibitor co-crystal structure., Marcotte DJ, Hus JC, Banos CC, Wildes C, Arduini R, Bergeron C, Hession CA, Baker DP, Lin E, Guckian KM, Dunah AW, Silvian LF, Protein Sci. 2017 Dec 27. doi: 10.1002/pro.3361. PMID:29280296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (6bjn.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 6BJN
  • Structure Factors (263 Kb)
  • Retrieve 6BJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BJN from S2C, [Save to disk]
  • View 6BJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BJN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bjn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bjn_B] [6bjn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BJN
  • Community annotation for 6BJN at PDBWiki (http://pdbwiki.org)

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