6BJO Peptide Binding Protein date Nov 06, 2017
title Pick1 Pdz Domain In Complex With The Small Molecule Inhibito
authors D.J.Marcotte
compound source
Molecule: Prkca-Binding Protein
Chain: A, B
Synonym: Protein Interacting With C Kinase 1,Protein Kinase Binding Protein;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pick1, Prkcabp
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.139 R_Free 0.157
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.011 54.011 77.873 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
ligand DUY enzyme
Primary referenceLock and Chop: A novel method for the generation of a PICK1 PDZ domain and piperidine-based inhibitor co-crystal structure., Marcotte DJ, Hus JC, Banos CC, Wildes C, Arduini R, Bergeron C, Hession CA, Baker DP, Lin E, Guckian KM, Dunah AW, Silvian LF, Protein Sci. 2017 Dec 27. doi: 10.1002/pro.3361. PMID:29280296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (6bjo.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 6BJO
  • CSU: Contacts of Structural Units for 6BJO
  • Structure Factors (666 Kb)
  • Retrieve 6BJO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BJO from S2C, [Save to disk]
    • View 6BJO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BJO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bjo_A] [6bjo_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BJO
  • Community annotation for 6BJO at PDBWiki (http://pdbwiki.org)

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