6BJV Rna Binding Protein date Nov 07, 2017
title Cirv P19 Protein In Complex With Sirna
authors D.V.Foss, N.Schirle, J.P.Pezacki, I.J.Macrae
compound source
Molecule: Rna Silencing Suppressor P19
Chain: A, B
Synonym: 19 Kda Symptom Severity Modulator
Engineered: Yes
Organism_scientific: Carnation Italian Ringspot Virus
Organism_common: Cirv
Organism_taxid: 39443
Gene: Orf4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'- R(Pupcpgpapapgpupapupupcpcpgpcpgpupapcpg 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Lampyridae
Organism_taxid: 7049

Molecule: Rna (5'- R(Pcpgpupapcpgpcpgpgpapapupapcpupupcpgpa 3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Lampyridae
Organism_taxid: 7049
symmetry Space Group: P 1
R_factor 0.260 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.586 46.997 54.883 109.44 111.11 96.78
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (6bjv.pdb1.gz) 191 Kb
  • CSU: Contacts of Structural Units for 6BJV
  • Structure Factors (440 Kb)
  • Retrieve 6BJV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BJV from S2C, [Save to disk]
  • View 6BJV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BJV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bjv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bjv_A] [6bjv_D] [6bjv_C] [6bjv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BJV
  • Community annotation for 6BJV at PDBWiki (http://pdbwiki.org)

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