6BM2 | Transcription | date | Nov 13, 2017 |
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title | Pol II Elongation Complex With An Abasic Lesion At I-1 Posit | ||||||||||||||
authors | W.Wang, D.Wang | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb1 Chain: A Synonym: Rna Polymerase II Subunit 1, Rna Polymerase II Sub Dna-Directed Rna Polymerase III Largest Subunit, Rna Polyme Subunit B220; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpo21 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb2 Chain: B Synonym: Rna Polymerase II Subunit 2, B150, Dna-Directed Rn Polymerase II 140 Kda Polypeptide; Ec: 2.7.7.6 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpb2 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb3 Chain: C Synonym: Rna Polymerase II Subunit B3,B44.5,Dna-Directed Rn Polymerase II 45 Kda Polypeptide; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpb3, Yil021w Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: E Synonym: Rna Polymerases I, II, And III Subunit Abc1, Abc27 Directed Rna Polymerases I, II, And III 27 Kda Polypeptide; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpb5 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: F Synonym: Short Name: Rna Polymerases I, II, And III Subunit Abc23, Dna-Directed Rna Polymerases I, II, And III 23 Kda Polypeptide; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpo26 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: H Synonym: Rna Polymerases I,II,And III Subunit Abc3,Abc14.4, Dna-Directed Rna Polymerases I,And III 14.5 Kda Polypeptide Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpb8, Yor224c, Yor50-14 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb9 Chain: I Synonym: Rna Polymerase II Subunit B9, B12.6, Dna-Directed Polymerase II 14.2 Kda Polypeptide, Dna-Directed Rna Polyme Subunit 9; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpb9 Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: J Synonym: Rna Polymerases I,II,And III Subunit Abc5,Abc10-Be Dna-Directed Rna Polymerases I,And III 8.3 Kda Polypeptide; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpb10, Yor210w Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerase II Subunit Rpb11 Chain: K Synonym: Rna Polymerase II Subunit B11,B13.6,Dna-Directed R Polymerase II 13.6 Kda Polypeptide; Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpb11, Yol005c Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna-Directed Rna Polymerases I, II, And III Subun Chain: L Synonym: Rna Polymerases I,II,And III Subunit Abc4,Abc10-Al Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Strain: Atcc 204508 S288c Gene: Rpc10, Rpb12, Yhr143w-A, Yhr143bw Expression_system: Saccharomyces Cerevisiae Expression_system_taxid: 4932 | ||||||||||||||
Molecule: Dna (5'-D(Pcpap(3dr)Pcptpcptptpgpaptp Chain: T Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||
Molecule: Rna (5'-R(Apupcpapapgpapgpa)-3') Chain: R Engineered: Yes |
Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 | ||||||||||||||
symmetry | Space Group: C 1 2 1 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 3.40 Å | ||||||||||||
ligand | 3DR, MG, ZN | enzyme | Transferase E.C.2.7.7.6 BRENDA | ||||||||||||
Gene Ontology | |||||||||||||||
Primary reference | Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II., Wang W, Walmacq C, Chong J, Kashlev M, Wang D, Proc Natl Acad Sci U S A. 2018 Feb 27. pii: 1722050115. doi:, 10.1073/pnas.1722050115. PMID:29487211 |
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