6BOE Transferase date Nov 19, 2017
title Tbk1 In Complex With Amide-Coupled Tetrazole Analog Of Amlex
authors T.S.Beyett, J.J.G.Tesmer
compound source
Molecule: Serinethreonine-Protein Kinase Tbk1
Chain: A
Synonym: Nf-Kappa-B-Activating Kinase,T2k,Tank-Binding Kina
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tbk1, Nak
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Ph7pfb
symmetry Space Group: P 32 2 1
R_factor 0.241 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.483 134.483 85.499 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.60 Å
ligand E0S enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCarboxylic Acid Derivatives of Amlexanox Display Enhanced Potency toward TBK1 and IKKepsilon and Reveal Mechanisms for Selective Inhibition., Beyett TS, Gan X, Reilly SM, Chang L, Gomez AV, Saltiel AR, Showalter HD, Tesmer JJG, Mol Pharmacol. 2018 Oct;94(4):1210-1219. doi: 10.1124/mol.118.112185. Epub 2018, Aug 6. PMID:30082428
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (218 Kb) [Save to disk]
  • Biological Unit Coordinates (6boe.pdb1.gz) 212 Kb
  • LPC: Ligand-Protein Contacts for 6BOE
  • CSU: Contacts of Structural Units for 6BOE
  • Structure Factors (119 Kb)
  • Retrieve 6BOE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BOE from S2C, [Save to disk]
  • View 6BOE in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BOE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6boe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BOE
  • Community annotation for 6BOE at PDBWiki (http://pdbwiki.org)

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