6BP6 Endocytosis date Nov 22, 2017
title Crystal Structure Of Commd9 Comm Domain
authors M.D.Healy, M.Chandra, B.M.Collins, R.Ghai
compound source
Molecule: Comm Domain-Containing Protein 9
Chain: A, B
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Commd9, Hspc166
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.248 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.404 79.404 58.572 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand MSE enzyme
Primary referenceStructural insights into the architecture and membrane interactions of the conserved COMMD proteins., Healy MD, Hospenthal MK, Hall RJ, Chandra M, Chilton M, Tillu V, Chen KE, Celligoi DJ, McDonald FJ, Cullen PJ, Lott JS, Collins BM, Ghai R, Elife. 2018 Aug 1;7. pii: 35898. doi: 10.7554/eLife.35898. PMID:30067224
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (6bp6.pdb1.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 6BP6
  • CSU: Contacts of Structural Units for 6BP6
  • Structure Factors (285 Kb)
  • Retrieve 6BP6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BP6 from S2C, [Save to disk]
    • View 6BP6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BP6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bp6_B] [6bp6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BP6
  • Community annotation for 6BP6 at PDBWiki (http://pdbwiki.org)

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