6BPR Oxidoreductase date Nov 26, 2017
title Crystal Structure Of Cysteine, Nitric Oxide-Bound Ferrous Fo Uncrosslinked F2-Tyr157 Human Cysteine Dioxygenase
authors A.Liu, J.Li, I.Shin
compound source
Molecule: Cysteine Dioxygenase Type 1
Chain: A
Synonym: Cysteine Dioxygenase Type I, Cdo-I
Ec: 1.13.11.20
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdo1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.161 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.306 131.306 34.175 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.96 Å
ligand CYS, F2Y, FE, GOL, NO, SO4 enzyme Oxidoreductase E.C.1.13.11.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the Tyr-Cys Cofactor Biogenesis in Cysteine Dioxygenase by the Genetic Incorporation of Fluorotyrosine., Li J, Koto T, Davis I, Liu A, Biochemistry. 2019 Apr 4. doi: 10.1021/acs.biochem.9b00006. PMID:30946568
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (6bpr.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 6BPR
  • CSU: Contacts of Structural Units for 6BPR
  • Structure Factors (150 Kb)
  • Retrieve 6BPR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BPR from S2C, [Save to disk]
    • View 6BPR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BPR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bpr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BPR
  • Community annotation for 6BPR at PDBWiki (http://pdbwiki.org)

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