6BPS Oxidoreductase date Nov 26, 2017
title Crystal Structure Of Cysteine-Bound Ferrous Form Of The Uncr F2-Tyr157 Human Cysteine Dioxygenase
authors A.Liu, J.Li, I.Shin
compound source
Molecule: Cysteine Dioxygenase Type 1
Chain: A
Synonym: Cysteine Dioxygenase Type I, Cdo-I
Ec: 1.13.11.20
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdo1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.167 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.210 131.210 34.144 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand CYS, F2Y, FE2, GOL, SO4 enzyme Oxidoreductase E.C.1.13.11.20 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCleavage of a carbon-fluorine bond by an engineered cysteine dioxygenase., Li J, Griffith WP, Davis I, Shin I, Wang J, Li F, Wang Y, Wherritt DJ, Liu A, Nat Chem Biol. 2018 Jun 25. pii: 10.1038/s41589-018-0085-5. doi:, 10.1038/s41589-018-0085-5. PMID:29942080
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (6bps.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 6BPS
  • CSU: Contacts of Structural Units for 6BPS
  • Structure Factors (126 Kb)
  • Retrieve 6BPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BPS from S2C, [Save to disk]
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    • Visual 3D analysis of 6BPS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bps_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BPS
  • Community annotation for 6BPS at PDBWiki (http://pdbwiki.org)

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