6BR1 Cell Cycle Inhibitor date Nov 29, 2017
title Tubulin-Rb3_sld-Ttl In Complex With Heterocyclic Pyrimidine 4a
authors G.Kumar, Y.Wang, W.Li, S.W.White
compound source
Molecule: Tubulin Alpha-1b Chain
Chain: A, C
Synonym: Alpha-Tubulin Ubiquitous,Tubulin K-Alpha-1,Tubulin Ubiquitous Chain;
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Tubulin Beta-2b Chain
Chain: B, D

Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Stathmin-4
Chain: E
Synonym: Stathmin-Like Protein B3,Rb3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stmn4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Tubulin Tyrosine Ligase
Chain: F
Engineered: Yes

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Ttl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.927 157.613 180.989 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ACP, CA, E3Y, GDP, GTP, MES, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


E


F


Primary referenceHeterocyclic-Fused Pyrimidines as Novel Tubulin Polymerization Inhibitors Targeting the Colchicine Binding Site: Structural Basis and Antitumor Efficacy., Banerjee S, Arnst KE, Wang Y, Kumar G, Deng S, Yang L, Li GB, Yang J, White SW, Li W, Miller DD, J Med Chem. 2018 Feb 22;61(4):1704-1718. doi: 10.1021/acs.jmedchem.7b01858. Epub , 2018 Feb 12. PMID:29406710
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (753 Kb) [Save to disk]
  • Biological Unit Coordinates (6br1.pdb1.gz) 744 Kb
  • LPC: Ligand-Protein Contacts for 6BR1
  • CSU: Contacts of Structural Units for 6BR1
  • Structure Factors (1759 Kb)
  • Retrieve 6BR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BR1 from S2C, [Save to disk]
  • View 6BR1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BR1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6br1_B] [6br1_D] [6br1_E] [6br1_C] [6br1_A] [6br1_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BR1
  • Community annotation for 6BR1 at PDBWiki (http://pdbwiki.org)

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