6BRR	Transferase Dna	date	Nov 30, 2017
title	Crystal Structure Of Dnmt3a (R836a)-Dnmt3l In Complex With D Containing Two Cpg Sites
authors	Z.M.Zhang, J.Song
compound		source
Molecule: Dna (Cytosine-5)-Methyltransferase 3a Chain: A, D Synonym: Dnmt3a,Dna Methyltransferase Hsaiiia,M.Hsaiiia Ec: 2.1.1.37 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dnmt3a Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Dna (Cytosine-5)-Methyltransferase 3-Like Chain: B, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dnmt3l Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Dna (25-Mer) Chain: E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: H 3	R_factor 0.199 R_Free 0.242
crystal cell	length a length b length c angle alpha angle beta angle gamma 205.005 205.005 89.358 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.97 Å
ligand	PYO, SAH	enzyme	Transferase E.C.2.1.1.37 BRENDA
Gene Ontology	Chain Function Process Component A, D C, B
Primary reference	Structural basis for DNMT3A-mediated de novo DNA methylation., Zhang ZM, Lu R, Wang P, Yu Y, Chen D, Gao L, Liu S, Ji D, Rothbart SB, Wang Y, Wang GG, Song J, Nature. 2018 Feb 15;554(7692):387-391. doi: 10.1038/nature25477. Epub 2018 Feb 7. PMID:29414941

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (359 Kb) [Save to disk] Biological Unit Coordinates (6brr.pdb1.gz) 348 Kb LPC: Ligand-Protein Contacts for 6BRR CSU: Contacts of Structural Units for 6BRR Structure Factors (596 Kb) Retrieve 6BRR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6BRR from S2C, [Save to disk]

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Visual 3D analysis of 6BRR

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6brr_C] [6brr_E] [6brr_B] [6brr_D] [6brr_A] [6brr_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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