6BSJ Viral Protein Dna Rna Inhibitor date Dec 03, 2017
title Structure Of Hiv-1 Rt Complexed With An Rnadna Hybrid Seque Preferred For Rna Hydrolysis
authors L.Tian, M.Kim, W.Yang
compound source
Molecule: Reverse Transcriptase P66 Subunit
Chain: A
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Reverse Transcriptase P51 Subunit
Chain: B
Engineered: Yes

Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Pol
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Gptpaptpgpcpcptpaptpapgptptpaptptpgptp C)-3');
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Rna (25-Mer)
Chain: R
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 31 2 1
R_factor 0.201 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
163.240 163.240 129.400 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.89 Å
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure of HIV-1 reverse transcriptase cleaving RNA in an RNA/DNA hybrid., Tian L, Kim MS, Li H, Wang J, Yang W, Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):507-512. doi:, 10.1073/pnas.1719746115. Epub 2018 Jan 2. PMID:29295939
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (6bsj.pdb1.gz) 178 Kb
  • CSU: Contacts of Structural Units for 6BSJ
  • Structure Factors (1251 Kb)
  • Retrieve 6BSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BSJ from S2C, [Save to disk]
  • View 6BSJ in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BSJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bsj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bsj_R] [6bsj_B] [6bsj_A] [6bsj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BSJ
  • Community annotation for 6BSJ at PDBWiki (http://pdbwiki.org)

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