6BT5 Signaling Protein date Dec 05, 2017
title Human Mglu8 Receptor Complexed With L-Ap4
authors J.M.Schkeryantz, Q.Chen, J.D.Ho, S.Atwell, A.Zhang, M.C.Vargas, J. J.A.Monn, J.Hao
compound source
Molecule: Metabotropic Glutamate Receptor 8
Chain: A, B
Synonym: Mglur8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grm8, Gprc1h, Mglur8
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: I 2 2 2
R_factor 0.253 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.650 166.008 196.038 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.92 Å
ligand E7P, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDetermination of L-AP4-bound human mGlu8 receptor amino terminal domain structure and the molecular basis for L-AP4's group III mGlu receptor functional potency and selectivity., Schkeryantz JM, Chen Q, Ho JD, Atwell S, Zhang A, Vargas MC, Wang J, Monn JA, Hao J, Bioorg Med Chem Lett. 2018 Feb 15;28(4):612-617. doi: 10.1016/j.bmcl.2018.01.037., Epub 2018 Jan 31. PMID:29402739
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (6bt5.pdb1.gz) 133 Kb
  • LPC: Ligand-Protein Contacts for 6BT5
  • CSU: Contacts of Structural Units for 6BT5
  • Structure Factors (395 Kb)
  • Retrieve 6BT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BT5 from S2C, [Save to disk]
    • View 6BT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BT5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bt5_A] [6bt5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BT5
  • Community annotation for 6BT5 at PDBWiki (http://pdbwiki.org)

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