6BXI Transferase date Dec 18, 2017
title X-Ray Crystal Structure Of Ndr1 Kinase Domain
authors S.Xiong, F.Sicheri
compound source
Molecule: Serinethreonine-Protein Kinase 38
Chain: A, B
Synonym: Ndr1 Protein Kinase,Nuclear Dbf2-Related Kinase 1
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Stk38, Ndr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.171 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.191 117.967 95.044 90.00 124.88 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ANP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for Auto-Inhibition of the NDR1 Kinase Domain by an Atypically Long Activation Segment., Xiong S, Lorenzen K, Couzens AL, Templeton CM, Rajendran D, Mao DYL, Juang YC, Chiovitti D, Kurinov I, Guettler S, Gingras AC, Sicheri F, Structure. 2018 Aug 7;26(8):1101-1115.e6. doi: 10.1016/j.str.2018.05.014. Epub, 2018 Jul 5. PMID:29983373
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (6bxi.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (6bxi.pdb2.gz) 114 Kb
  • LPC: Ligand-Protein Contacts for 6BXI
  • CSU: Contacts of Structural Units for 6BXI
  • Structure Factors (1347 Kb)
  • Retrieve 6BXI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BXI from S2C, [Save to disk]
    • View 6BXI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BXI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bxi_B] [6bxi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BXI
  • Community annotation for 6BXI at PDBWiki (http://pdbwiki.org)

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