6BZG Dna Binding Protein date Dec 23, 2017
title Structure Of S. Cerevisiae Zip2:Spo16 Complex, P212121 Form
authors K.Arora, K.D.Corbett
compound source
Molecule: Protein Zip2
Chain: B
Synonym: Zipping Up Meiotic Chromosomes Protein 2
Engineered: Yes
Mutation: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Zip2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Sporulation-Specific Protein 16
Chain: A
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Spo16
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.249 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.249 96.212 101.445 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.13 Å
ligand P6G, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe conserved XPF:ERCC1-like Zip2:Spo16 complex controls meiotic crossover formation through structure-specific DNA binding., Arora K, Corbett KD, Nucleic Acids Res. 2018 Dec 19. pii: 5253063. doi: 10.1093/nar/gky1273. PMID:30566683
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (6bzg.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 6BZG
  • CSU: Contacts of Structural Units for 6BZG
  • Structure Factors (1151 Kb)
  • Retrieve 6BZG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BZG from S2C, [Save to disk]
  • View 6BZG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BZG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bzg_A] [6bzg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BZG
  • Community annotation for 6BZG at PDBWiki (http://pdbwiki.org)

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