6C0W Structural Protein Dna date Jan 02, 2018
title Cryo-Em Structure Of Human Kinetochore Protein Cenp-N With T Centromeric Nucleosome Containing Cenp-A
authors K.Zhou, S.Pentakota, I.R.Vetter, G.P.Morgan, A.Petrovic, A.Musacc K.Luger
compound source
Molecule: Histone H3-Like Centromeric Protein A
Chain: A, E
Synonym: Centromere Autoantigen A,Centromere Protein A,Cenp
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cenpa
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Histone H4
Chain: B, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4;
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768

Molecule: Histone H2a
Chain: C, G
Synonym: Histone H2al
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2ac, H2afl
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H2b
Chain: D, H
Synonym: Histone H2b.1 A, Histone H2b.A, H2ba, Histone H2b Histone H2b.H, H2bh, Histone H2b.K, H2bk, Histone H2b.L,
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hist1h2bc, H2bfl, Hist1h2be, H2bfh, Hist1h2bf, H2bfg, Hist1h2bg, H2bfa, Hist1h2bi, H2bfk;
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 147 Mer Dna
Chain: I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 885276

Molecule: 147 Mer Dna
Chain: J
Engineered: Yes

Synthetic: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 885276

Molecule: Centromere Protein N
Chain: K
Synonym: Cenp-N, Interphase Centromere Complex Protein 32
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cenpn, C16orf60, Icen32, Bm-309
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


K


Primary referenceDecoding the centromeric nucleosome through CENP-N., Pentakota S, Zhou K, Smith C, Maffini S, Petrovic A, Morgan GP, Weir JR, Vetter IR, Musacchio A, Luger K, Elife. 2017 Dec 27;6. doi: 10.7554/eLife.33442. PMID:29280735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (6c0w.pdb1.gz) 235 Kb
  • CSU: Contacts of Structural Units for 6C0W
  • Retrieve 6C0W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C0W from S2C, [Save to disk]
  • View 6C0W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6C0W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6c0w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c0w_G] [6c0w_J] [6c0w_C] [6c0w_K] [6c0w_A] [6c0w_F] [6c0w_H] [6c0w_D] [6c0w_I] [6c0w_E] [6c0w_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C0W
  • Community annotation for 6C0W at PDBWiki (http://pdbwiki.org)

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