6C1Y Dna Binding Protein Dna date Jan 05, 2018
title Mbd Of Human Mecp2 In Complex With Methylated Dna
authors K.Liu, C.Bian, W.Tempel, A.K.Wernimont, C.H.Arrowsmith, C.Bountra A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Methyl-Cpg-Binding Protein 2
Chain: A, B
Synonym: Mecp2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mecp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl

Molecule: 12-Mer Dna
Chain: D, C, F, E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Synthetic Dna
symmetry Space Group: P 1
R_factor 0.231 R_Free 0.286
length a length b length c angle alpha angle beta angle gamma
40.753 47.359 54.623 68.15 89.83 65.98
method X-Ray Diffractionresolution 2.30 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (6c1y.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (6c1y.pdb2.gz) 44 Kb
  • CSU: Contacts of Structural Units for 6C1Y
  • Structure Factors (871 Kb)
  • Retrieve 6C1Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C1Y from S2C, [Save to disk]
  • View 6C1Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6C1Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6c1y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c1y_A] [6c1y_B] [6c1y_C] [6c1y_D] [6c1y_E] [6c1y_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C1Y
  • Community annotation for 6C1Y at PDBWiki (http://pdbwiki.org)

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