6C31 Dna Binding Protein Dna date Jan 09, 2018
title Crystal Structure Of Tetr Family Protein Rv0078 In Complex W
authors H.C.Hsu, H.Li
compound source
Molecule: Tetr Family Transcriptional Regulator
Chain: A, B, C, D, E, F, G, H
Synonym: Rv0078
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Strain: Atcc 25618 H37rv
Gene: Lh57_00450
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Dna (5'- D(Papcpapapgpcpapgpapcptpgpcpcpgpgptpapa
Chain: I, K
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis H37rv
Organism_taxid: 83332

Molecule: Dna (5'- D(Gptptpapcpcpgpgpcpapgptpcptpgpcptptpgp A)-3');
Chain: J, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mycobacterium Tuberculosis H37rv
Organism_taxid: 83332
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.039 80.040 186.660 90.00 90.07 90.00
method X-Ray Diffractionresolution 3.00 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCytokinin Signaling in Mycobacterium tuberculosis., Samanovic MI, Hsu HC, Jones MB, Jones V, McNeil MR, Becker SH, Jordan AT, Strnad M, Xu C, Jackson M, Li H, Darwin KH, MBio. 2018 Jun 19;9(3). pii: mBio.00989-18. doi: 10.1128/mBio.00989-18. PMID:29921668
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (6c31.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (6c31.pdb2.gz) 139 Kb
  • CSU: Contacts of Structural Units for 6C31
  • Structure Factors (1302 Kb)
  • Retrieve 6C31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C31 from S2C, [Save to disk]
  • View 6C31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6C31
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6c31 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c31_L] [6c31_D] [6c31_E] [6c31_I] [6c31_B] [6c31_F] [6c31_H] [6c31_G] [6c31_K] [6c31_A] [6c31_J] [6c31_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C31
  • Community annotation for 6C31 at PDBWiki (http://pdbwiki.org)

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