6C3I Transport Protein date Jan 09, 2018
title Crystal Structure Of The Deinococcus Radiodurans Nrampmnth Transition Metal Transporter G45r Mutant In An Inward Occlu
authors C.M.Zimanyi, A.T.Bozzi, R.Gaudet
compound source
Molecule: Divalent Metal Cation Transporter Mnth
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Deinococcus Radiodurans R1
Organism_taxid: 243230
Strain: Atcc 13939 Dsm 20539 Jcm 16871 Lmg 4051 Nbr Ncimb 9279 R1 Vkm B-1422;
Gene: Mnth, Dr_1709
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 21 21 21
R_factor 0.243 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.727 97.850 118.257 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • manganese ion transmembrane ...
  • cadmium ion transmembrane tr...
  • symporter activity


  • Primary referenceStructures in multiple conformations reveal distinct transition metal and proton pathways in an Nramp transporter., Bozzi AT, Zimanyi CM, Nicoludis JM, Lee BK, Zhang CH, Gaudet R, Elife. 2019 Feb 4;8. pii: 41124. doi: 10.7554/eLife.41124. PMID:30714568
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (6c3i.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (6c3i.pdb2.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 6C3I
  • CSU: Contacts of Structural Units for 6C3I
  • Structure Factors (152 Kb)
  • Retrieve 6C3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C3I from S2C, [Save to disk]
  • View 6C3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6C3I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c3i_A] [6c3i_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C3I
  • Community annotation for 6C3I at PDBWiki (http://pdbwiki.org)

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