6C52 De Novo Protein date Jan 13, 2018
title Cross-Alpha Amyloid-Like Structure Alphatet
authors L.Liu, S.Q.Zhang
compound source
Molecule: Cross-Alpha Amyloid-Like Structure Alphatet
Chain: A, B, C, D
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 2
R_factor 0.192 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.450 75.570 27.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand ACE, GOL, NH2 enzyme
Primary referenceDesigned peptides that assemble into cross-alpha amyloid-like structures., Zhang SQ, Huang H, Yang J, Kratochvil HT, Lolicato M, Liu Y, Shu X, Liu L, DeGrado WF, Nat Chem Biol. 2018 Jul 30. pii: 10.1038/s41589-018-0105-5. doi:, 10.1038/s41589-018-0105-5. PMID:30061717
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (6c52.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 6C52
  • CSU: Contacts of Structural Units for 6C52
  • Structure Factors (123 Kb)
  • Retrieve 6C52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C52 from S2C, [Save to disk]
    • View 6C52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6C52
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c52_A] [6c52_D] [6c52_C] [6c52_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6C52
  • Community annotation for 6C52 at PDBWiki (http://pdbwiki.org)

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