6C6D Cytokine date Jan 18, 2018
title 20mer Crystal Structure Of Cc Chemokine 5 (Ccl5)
authors W.G.Liang, W.J.Tang
compound source
Molecule: C-C Motif Chemokine 5
Chain: A, B, C, D, E, F, G, H, I, J, K, L, S, T, M, N, O, P
Fragment: Unp Residues 27-91
Synonym: Eocp,Eosinophil Chemotactic Cytokine,Sis-Delta,Sma Inducible Cytokine A5,T Cell-Specific Protein P228,Tcp228,T Specific Protein Rantes;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccl5, D17s136e, Scya5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.248 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.866 322.783 157.512 90.00 90.00 90.00
method X-Ray Diffractionresolution 5.50 Å
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G
  • receptor signaling protein t...
  • CCR1 chemokine receptor bind...
  • chemoattractant activity
  • chemokine receptor antagonis...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (6c6d.pdb1.gz) 212 Kb
  • CSU: Contacts of Structural Units for 6C6D
  • Structure Factors (56 Kb)
  • Retrieve 6C6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6C6D from S2C, [Save to disk]
  • View 6C6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6C6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6c6d_T] [6c6d_F] [6c6d_J] [6c6d_G] [6c6d_E] [6c6d_R] [6c6d_D] [6c6d_C] [6c6d_Q] [6c6d_H] [6c6d_P] [6c6d_M] [6c6d_I] [6c6d_B] [6c6d_S] [6c6d_O] [6c6d_N] [6c6d_A] [6c6d_L] [6c6d_K]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6C6D
  • Community annotation for 6C6D at PDBWiki (http://pdbwiki.org)

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