6C6K	Rna Binding Protein Rna	date	Jan 18, 2018
title	Structural Basis For Preferential Recognition Of Cap 0 Rna B Ifit1-Ifit3 Protein Complex
authors	G.K.Amarasinghe, D.W.Leung, B.Johnson, W.Xu
compound		source
Molecule: Interferon-Induced Protein With Tetratricopeptide 1; Chain: A, B Synonym: Ifit-1, Interferon-Induced 56 Kda Protein,P56 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ifit1, G10p1, Ifi56, Ifnai1, Isg56 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Interferon-Induced Protein With Tetratricopeptide 3; Chain: C, D Fragment: Unp Residues 416-459 Synonym: Ifit-3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ifit3, Cig-49, Ifi60, Ifit4, Isg60 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rna (5'-R((M7g)Papupapgpgpcpgpgpcpg)-3 Chain: E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Equine Encephalosis Virus Organism_taxid: 201490
symmetry	Space Group: P 1	R_factor 0.169 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.957 80.484 88.054 79.82 78.81 90.04
method	X-Ray Diffraction	resolution	2.54 Å
ligand	M7G, MG	enzyme
Gene Ontology	Chain Function Process Component A, B intracellular transport of v... D, C
Primary reference	Human IFIT3 Modulates IFIT1 RNA Binding Specificity and Protein Stability., Johnson B, VanBlargan LA, Xu W, White JP, Shan C, Shi PY, Zhang R, Adhikari J, Gross ML, Leung DW, Diamond MS, Amarasinghe GK, Immunity. 2018 Mar 20;48(3):487-499.e5. doi: 10.1016/j.immuni.2018.01.014. Epub, 2018 Mar 8. PMID:29525521

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (6c6k.pdb1.gz) 91 Kb Biological Unit Coordinates (6c6k.pdb2.gz) 91 Kb LPC: Ligand-Protein Contacts for 6C6K CSU: Contacts of Structural Units for 6C6K Structure Factors (1264 Kb) Retrieve 6C6K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6C6K from S2C, [Save to disk]

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Visual 3D analysis of 6C6K

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6c6k_C] [6c6k_B] [6c6k_E] [6c6k_F] [6c6k_D] [6c6k_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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