6CC8	Dna Binding Protein Dna	date	Feb 06, 2018
title	Crystal Structure Mbd3 Mbd Domain In Complex With Methylated
authors	K.Liu, W.Tempel, C.Bountra, C.H.Arrowsmith, A.M.Edwards, J.Min, St Genomics Consortium (Sgc)
compound		source
Molecule: Methyl-Cpg-Binding Domain Protein 3 Chain: A, B Fragment: Mbd Domain (Unp Residues 1-71) Synonym: Methyl-Cpg-Binding Protein Mbd3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mbd3 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21-V2r-Prare2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Gstlic
Molecule: Methylated Cpg Dna Chain: C, D, E, F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: Dodecanucleotide
symmetry	Space Group: C 1 2 1	R_factor 0.224 R_Free 0.259
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.550 36.640 130.930 90.00 92.77 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	5CM, UNX	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural analyses reveal that MBD3 is a methylated CG binder., Liu K, Lei M, Wu Z, Gan B, Cheng H, Li Y, Min J, FEBS J. 2019 Apr 13. doi: 10.1111/febs.14850. PMID:30980593

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (6cc8.pdb1.gz) 44 Kb Biological Unit Coordinates (6cc8.pdb2.gz) 44 Kb LPC: Ligand-Protein Contacts for 6CC8 CSU: Contacts of Structural Units for 6CC8 Structure Factors (2733 Kb) Retrieve 6CC8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6CC8 from S2C, [Save to disk]

View 6CC8 in 3D

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Visual 3D analysis of 6CC8

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6cc8_C] [6cc8_E] [6cc8_A] [6cc8_B] [6cc8_D] [6cc8_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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