6CDY Transcription Transcription Inhibitor date Feb 09, 2018
title Crystal Structure Of Tead Complexed With Its Inhibitor
authors S.Liu, X.Han, X.Luo
compound source
Molecule: Transcriptional Enhancer Factor Tef-4
Chain: A, B
Synonym: Tea Domain Family Member 2,Tead-2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead2, Tef4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.464 61.640 80.421 90.00 117.40 90.00
method X-Ray Diffractionresolution 2.32 Å
ligand EY1 enzyme
Primary referenceLats1/2 Sustain Intestinal Stem Cells and Wnt Activation through TEAD-Dependent and Independent Transcription., Li Q, Sun Y, Jarugumilli GK, Liu S, Dang K, Cotton JL, Xiol J, Chan PY, DeRan M, Ma L, Li R, Zhu LJ, Li JH, Leiter AB, Ip YT, Camargo FD, Luo X, Johnson RL, Wu X, Mao J, Cell Stem Cell. 2020 May 7;26(5):675-692.e8. doi: 10.1016/j.stem.2020.03.002., Epub 2020 Apr 6. PMID:32259481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (6cdy.pdb1.gz) 98 Kb
  • Biological Unit Coordinates (6cdy.pdb2.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 6CDY
  • CSU: Contacts of Structural Units for 6CDY
  • Structure Factors (151 Kb)
  • Retrieve 6CDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CDY from S2C, [Save to disk]
    • View 6CDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CDY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cdy_A] [6cdy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CDY
  • Community annotation for 6CDY at PDBWiki (http://pdbwiki.org)

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