6CET Signaling Protein date Feb 12, 2018
title Cryo-Em Structure Of Gator1
authors K.Shen, R.K.Huang, E.J.Brignole, Z.Yu, D.M.Sabatini
compound source
Molecule: Gator Complex Protein Nprl2
Chain: N
Synonym: Gene 21 Protein,G21 Protein,Nitrogen Permease Regu Like Protein,Npr2-Like Protein,Tumor Suppressor Candidate 4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nprl2, Tusc4
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: 293f

Molecule: Gator Complex Protein Nprl3
Chain: M
Synonym: -14 Gene Protein,Alpha-Globin Regulatory Element-C Gene Protein,Nitrogen Permease Regulator 3-Like Protein,Pro Cgthba;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nprl3, C16orf35, Cgthba, Mare
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: 293f

Molecule: Gator Complex Protein Depdc5
Chain: D
Synonym: Dep Domain-Containing Protein 5
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Depdc5, Kiaa0645
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: 293f
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.40 Å
Gene
Ontology
ChainFunctionProcessComponent
D
  • GTPase activator activity


  • M
  • GTPase activator activity


  • N
  • protein kinase activity
  • GTPase activator activity


  • Primary referenceArchitecture of the human GATOR1 and GATOR1-Rag GTPases complexes., Shen K, Huang RK, Brignole EJ, Condon KJ, Valenstein ML, Chantranupong L, Bomaliyamu A, Choe A, Hong C, Yu Z, Sabatini DM, Nature. 2018 Apr 5;556(7699):64-69. doi: 10.1038/nature26158. Epub 2018 Mar 28. PMID:29590090
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (6cet.pdb1.gz) 251 Kb
  • CSU: Contacts of Structural Units for 6CET
  • Retrieve 6CET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CET from S2C, [Save to disk]
  • View 6CET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CET
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cet_N] [6cet_D] [6cet_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CET
  • Community annotation for 6CET at PDBWiki (http://pdbwiki.org)

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