6CM1 Lipid Binding Protein date Mar 02, 2018
title Mt1-Mmp Hpx Domain With Blade 2 Loop Bound To Nanodiscs
authors T.C.Marcink, S.R.Van Doren
compound source
Molecule: Matrix Metalloproteinase-14
Chain: A
Fragment: Residues 316-511
Synonym: Mmp-14,Mmp-X1,Membrane-Type Matrix Metalloproteina Mtmmp1,Membrane-Type-1 Matrix Metalloproteinase,Mt1mmp;
Ec: 3.4.24.80
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mmp14
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Apolipoprotein A-I
Chain: B, C
Fragment: Residues 79-267
Synonym: Apoa-I,Apolipoprotein A1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apoa1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.24.80 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C, B


Primary referenceMT1-MMP Binds Membranes by Opposite Tips of Its beta Propeller to Position It for Pericellular Proteolysis., Marcink TC, Simoncic JA, An B, Knapinska AM, Fulcher YG, Akkaladevi N, Fields GB, Van Doren SR, Structure. 2018 Nov 21. pii: S0969-2126(18)30369-1. doi:, 10.1016/j.str.2018.10.008. PMID:30471921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9140 Kb) [Save to disk]
  • Biological Unit Coordinates (6cm1.pdb1.gz) 605 Kb
  • CSU: Contacts of Structural Units for 6CM1
  • Original NMR restraints for 6CM1 from PDB
  • Retrieve 6CM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CM1 from S2C, [Save to disk]
  • View 6CM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CM1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6cm1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cm1_C] [6cm1_B] [6cm1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CM1
  • Community annotation for 6CM1 at PDBWiki (http://pdbwiki.org)

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