6CM3	Viral Protein	date	Mar 02, 2018
title	Bg505 Sosip In Complex With Scd4, 17b, 8anc195
authors	H.Wang, P.J.Bjorkman
compound		source
Molecule: Envelope Glycoprotein Gp160 Chain: A, B, C Synonym: Env Polyprotein Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Env Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: Envelope Glycoprotein Gp160 Chain: D, E, F Synonym: Env Polyprotein Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Gene: Env Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: T-Cell Surface Glycoprotein Cd4 Chain: G, H, I Synonym: T-Cell Surface Antigen T4leu-3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd4 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: 17b Fab Light Chain Chain: J, L, N Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: 17b Fab Heavy Chain Chain: K, M, O Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: 8anc195 Fab Heavy Chain Chain: P, R, T Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: 8anc195 Fab Light Chain Chain: Q, S, U Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	3.54 Å
ligand	BMA, MAN, NAG	enzyme
Gene Ontology	Chain Function Process Component A, B, C F, E, D H, I, G
Primary reference	Partially Open HIV-1 Envelope Structures Exhibit Conformational Changes Relevant for Coreceptor Binding and Fusion., Wang H, Barnes CO, Yang Z, Nussenzweig MC, Bjorkman PJ, Cell Host Microbe. 2018 Oct 10;24(4):579-592.e4. doi: 10.1016/j.chom.2018.09.003. PMID:30308160

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (479 Kb) [Save to disk] Biological Unit Coordinates (6cm3.pdb1.gz) 459 Kb LPC: Ligand-Protein Contacts for 6CM3 CSU: Contacts of Structural Units for 6CM3 Retrieve 6CM3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6CM3 from S2C, [Save to disk]

View 6CM3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6CM3

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6cm3_Q] [6cm3_U] [6cm3_D] [6cm3_I] [6cm3_R] [6cm3_K] [6cm3_F] [6cm3_G] [6cm3_E] [6cm3_A] [6cm3_M] [6cm3_S] [6cm3_J] [6cm3_O] [6cm3_B] [6cm3_T] [6cm3_P] [6cm3_L] [6cm3_N] [6cm3_C] [6cm3_H] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 6CM3 at PDBWiki (http://pdbwiki.org)

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