6CMM Transferase Transferase Inhibitor date Mar 05, 2018
title Crystal Structure Of The Human Vaccinia-Related Kinase Bound Dipropynyl-Dihydropteridine Inhibitor
authors C.V.Dos Reis, G.P.De Souza, R.M.Counago, A.Azevedo, C.Guimaraes, A.Mascarello, F.Gama, M.Ferreira, K.B.Massirer, P.Arruda, A.M.Ed J.M.Elkins, Structural Genomics Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Kinase Vrk1
Chain: A, B, C, D
Fragment: Residues 3-364
Synonym: Vaccinia-Related Kinase 1
Ec: 2.7.11.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vrk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3
symmetry Space Group: P 21 21 21
R_factor 0.190 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.058 95.753 192.833 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACT, F7D, PEG, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (425 Kb) [Save to disk]
  • Biological Unit Coordinates (6cmm.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (6cmm.pdb2.gz) 105 Kb
  • Biological Unit Coordinates (6cmm.pdb3.gz) 108 Kb
  • Biological Unit Coordinates (6cmm.pdb4.gz) 107 Kb
  • LPC: Ligand-Protein Contacts for 6CMM
  • CSU: Contacts of Structural Units for 6CMM
  • Structure Factors (3967 Kb)
  • Retrieve 6CMM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CMM from S2C, [Save to disk]
  • View 6CMM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CMM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cmm_A] [6cmm_D] [6cmm_B] [6cmm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CMM
  • Community annotation for 6CMM at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science